PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000553.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 431aa    MW: 49819.4 Da    PI: 6.3088
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000553.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-05154177123
                              EEETTTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                              y C+ Cg+ ++++++Lk+H +  H
  Itr_sc000553.1_g00002.1 154 YICSVCGRKCKTNMDLKKHFKQlH 177
                              89*****************98766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0079154177IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.198154182IPR007087Zinc finger, C2H2
PROSITE patternPS000280156177IPR007087Zinc finger, C2H2
CDDcd061674.09E-10168308No hitNo description
Gene3DG3DSA:3.40.50.10107.7E-5239295IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MLSATLFNPI QLKTHSSILP KQLSPNFSSF KPILLLPPKP SIYPQRALRW SIKACASGQE  60
IDMVRTKEGV YTAKSKKVVV LWDLDNKPPR GPPYKAAMEL KKLAEKFGDV VDMSAYANRH  120
AFIHLPQWVI DERRERRRLD ILERKGAVTP SEPYICSVCG RKCKTNMDLK KHFKQLHERE  180
REKKMNRMRA LKGKKRQRFK ERFIDNNQKY MEAARSLVTP KEGYGLASEL RRAGVFVKTV  240
ADKPQAADWA LKRQMQHSMS RGIDWLFLVS DDSDFSEMLK RARIANLGTV VVGDWDRSLG  300
RYADLWVPWI GVENGEITEN DLVLKKQRSS NSRFSVSEFD GGMTEEIANF DGFMDDLVER  360
REFIGSRGSA FSEAEDSDFE EENDEVYWLR LDGKNGKRFQ NGVSINSEDE DEEEEEDYIF  420
DSEDEETDMD D
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004232567.10.0PREDICTED: uncharacterized protein LOC101257921
TrEMBLA0A0V0HYN40.0A0A0V0HYN4_SOLCH; Putative C2H2-like zinc finger protein-like (Fragment)
STRINGPGSC0003DMT4000038440.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122681518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-131C2H2-like zinc finger protein